Auto-immune protocol, in a nutshell, calls for removing foods that are most likely to be problematic for people with autoimmune disease — grains, beans, legumes, dairy, eggs, nuts, seeds, nightshades, as well as food chemicals and additives. In addition, nutrient-dense foods are added to restore nutrient status, such as bone broth, high-quality meat and wild-caught fish, as well as organ meats, fermented foods and a wide variety of fruits and vegetables. Over the course of the elimination phase (which can last from a month to a year), you take note of the changes you experience in your health. When it comes time to slowly and systematically reintroduce foods, you will be able to tell exactly which foods are holding you back, and able to use this information to construct a diet that will best support your healing needs.